C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6317
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183159 Gm6317-001 ENSMUSG00000098003 10090 - 13:78372987-78379134 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSMUST00000183159
Transcript ID Brain Kidney
ENSMUST00000183159 0.023±0.00 0.036±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_00083A CIL_00083A_0002 VISTA 13:78023865-78625614
CIL_0008KX CIL_0008KX_0002 VISTA 13:78144587-78747858
CIL_0009D7 CIL_0009D7_0002 VISTA 13:78280584-78882512
CIL_00095M CIL_00095M_0002 VISTA 13:78300965-78903744
CIL_0008EW CIL_0008EW_0002 VISTA 13:78357998-78959030

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 828
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 686
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 830
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 828
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 828
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 645
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 610
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 641
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 394
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 593
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 617
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 771
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 662
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 435
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 412
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 529
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 518
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 436
ENST00000443168 GAPDHP33-001 processed_pseudogene Homo_sapiens 0 283
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 460
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 418
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 298
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 809
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 4e-19 100
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 686
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 686
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 582
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 608
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 665
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 468
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 634
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 259
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 693
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 693
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 403
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 608
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 370
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 752

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