C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 28344
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185704 RP23-122B3.2-001 ENSMUSG00000099433 10090 + 1:19062857-19063135 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000185704
Transcript ID Testis
ENSMUST00000185704 0.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MC CIL_0007MC_0006 UCNEbase 1:18307438-19700223
CIL_000813 CIL_000813_0002 VISTA 1:18655282-19257504
CIL_00096L CIL_00096L_0002 VISTA 1:18806734-19407712

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 230
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 2.8026e-45 185
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 207
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 230
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 230
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 230
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 230
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 7e-34 148
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 230

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