C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 1c
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000077539 tuba1c-001 ENSDARG00000055216 7955 - 23:35742201-35745715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000077539
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000077539 96.858±45.29 4.552±5.42 0.159±0.00 0.064±0.00 6.732±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 414
ENSMUST00000032233 Tuba8-001 protein_coding Mus_musculus 0 996
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 1506
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 1541
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 1171
ENSMUST00000079464 Tuba4a-002 protein_coding Mus_musculus 0 1339
ENSMUST00000087445 Tuba3b-001 protein_coding Mus_musculus 0 1234
ENSMUST00000088246 Tuba3a-201 protein_coding Mus_musculus 0 1245
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 1548
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 1483
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 619
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 961
ENSMUST00000140969 Tuba1b-002 retained_intron Mus_musculus 0 243
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 311
ENSMUST00000186213 Tuba4a-001 protein_coding Mus_musculus 0 1345
ENSMUST00000187103 Tuba4a-005 retained_intron Mus_musculus 3.00018e-42 176
ENSMUST00000188593 Tuba4a-003 protein_coding Mus_musculus 0 1022
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1421
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1421
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1210
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 998
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1266
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1002
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1465
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1469
ENST00000400113 TUBA3C-002 protein_coding Homo_sapiens 0 1242
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 998
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1000
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 364
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1465
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 387
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 466
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1415
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 244
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 261
ENST00000559655 RP11-83J16.3-001 processed_pseudogene Homo_sapiens 0 292
ENST00000618094 TUBA3C-201 protein_coding Homo_sapiens 0 1090

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