C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188772 Als2cr12-002 ENSMUSG00000047528 10090 - 1:58646903-58695989 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000188772
Transcript ID Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000188772 0.153±0.00 0.066±0.01 0.088±0.00 0.108±0.00 0.057±0.00 0.039±0.00 0.027±0.00 0.269±0.08 0.264±0.26 35.355±5.99

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086985 cbx5-201 protein_coding Danio_rerio 5e-27 126
ENSDART00000133259 cbx5-003 protein_coding Danio_rerio 5e-27 126
ENSDART00000142760 cbx5-005 protein_coding Danio_rerio 5e-27 126
ENSDART00000143340 cbx5-001 protein_coding Danio_rerio 5e-27 126
ENSDART00000147598 cbx5-006 protein_coding Danio_rerio 9e-25 119
ENST00000325243 CBX3P1-001 processed_pseudogene Homo_sapiens 0 327
ENST00000337620 CBX3-001 protein_coding Homo_sapiens 0 381
ENST00000396386 CBX3-002 protein_coding Homo_sapiens 0 381
ENST00000402326 CBX3P9-001 processed_pseudogene Homo_sapiens 0 357
ENST00000409747 CBX3-003 protein_coding Homo_sapiens 0 355
ENST00000430257 CBX3P6-001 processed_pseudogene Homo_sapiens 0 250
ENST00000462165 CBX3-006 protein_coding Homo_sapiens 2e-39 167
ENST00000481057 CBX3-005 retained_intron Homo_sapiens 0 381
ENST00000497498 CBX3-008 processed_transcript Homo_sapiens 0 231
ENST00000508108 CBX3P3-001 processed_pseudogene Homo_sapiens 0 303
ENST00000538909 CBX3P4-001 transcribed_processed_pseudogene Homo_sapiens 0 283
ENST00000552017 CBX3P5-001 processed_pseudogene Homo_sapiens 0 307

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