C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457299 AC087163.2-001 ENSG00000232344 9606 + 17:18010643-18011822 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457299
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457299 0.222±0.00 0.508±0.00 0.324±0.00 0.558±0.12 0.091±0.00 0.193±0.00 0.313±0.00 0.021±0.00 0.085±0.00 0.343±0.00 0.196±0.13 0.070±0.00 0.385±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209
CIL_0000DZ CIL_0000DZ_0001 CGP 17:17977409-18068404

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 638
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 638
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 638
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 638
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 610
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 610
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000121190 Gm7860-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000120203 Gm12933-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 588
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 584
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 575
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 558
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 488
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 488
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 488
ENSMUST00000119217 Gm8302-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 486
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 470
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 470
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 453
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000190239 RP23-16N14.5-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 416
ENSMUST00000120110 Gm13204-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000120471 Gm11888-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000187136 RP23-258M15.4-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000188013 RP24-467J24.1-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000122465 Gm12152-001 processed_pseudogene Mus_musculus 0 252
ENSMUST00000132803 Rps2-006 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000118606 Gm3943-001 processed_pseudogene Mus_musculus 1.96182e-44 183
ENSMUST00000119396 Gm12959-001 processed_pseudogene Mus_musculus 7.00649e-44 182
ENSMUST00000173358 Gm20396-001 processed_pseudogene Mus_musculus 4e-16 90

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