C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128934 Krt13-002 ENSMUSG00000044041 10090 - 11:100119145-100120577 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverLungOvaryPlacentaENSMUST00000128934
Transcript ID Bladder Liver Lung Ovary Placenta
ENSMUST00000128934 0.166±0.02 0.241±0.15 0.087±0.00 1.642±0.00 2.227±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000W CGP 11:100102007-100121566
CIL_00056U CIL_00056U_0011 CGP 11:100117327-100135928

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246635 KRT13-001 protein_coding Homo_sapiens 0 558
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 412
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 248
ENST00000336861 KRT13-002 protein_coding Homo_sapiens 0 558
ENST00000361566 KRT19-001 protein_coding Homo_sapiens 0 219
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 322
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 412
ENST00000405746 KRT19P1-001 processed_pseudogene Homo_sapiens 2.94273e-44 183
ENST00000455635 KRT19-002 protein_coding Homo_sapiens 0 206
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 322
ENST00000463128 KRT17-002 protein_coding Homo_sapiens 0 248
ENST00000463447 KRT15-005 retained_intron Homo_sapiens 0 326
ENST00000464634 KRT13-006 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000468313 KRT13-003 retained_intron Homo_sapiens 0 558
ENST00000468880 KRT19-005 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 322
ENST00000479031 KRT19-004 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 200
ENST00000497016 KRT15-002 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 248
ENST00000587118 KRT13-009 processed_transcript Homo_sapiens 0.00000000000005 82
ENST00000587544 KRT13-005 protein_coding Homo_sapiens 0 558
ENST00000590038 KRT17-006 protein_coding Homo_sapiens 0 209
ENST00000590425 KRT13-007 protein_coding Homo_sapiens 0 425
ENST00000593096 KRT19-007 protein_coding Homo_sapiens 0 222

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