C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000007275 Krt13-001 ENSMUSG00000044041 10090 - 11:100117327-100121566 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000007275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000007275 0.228±0.03 0.125±0.00 0.176±0.00 0.014±0.00 0.044±0.01 0.213±0.12 0.013±0.01 516.587±516.43 0.667±0.19 1.642±2.07 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000W CGP 11:100102007-100121566
CIL_00056U CIL_00056U_0011 CGP 11:100117327-100135928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0007010 IEA cytoskeleton organization
GO:0009314 IEA response to radiation
GO:0043587 IEA tongue morphogenesis
GO:0045095 IEA keratin filament
GO:0045111 IEA intermediate filament cytoskeleton
GO:0070062 IEA extracellular vesicular exosome
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167586 KRT14-001 protein_coding Homo_sapiens 0 547
ENST00000246635 KRT13-001 protein_coding Homo_sapiens 0 1362
ENST00000254043 KRT15-001 protein_coding Homo_sapiens 0 952
ENST00000300992 KRT17P2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 394
ENST00000301653 KRT16-001 protein_coding Homo_sapiens 0 488
ENST00000311208 KRT17-001 protein_coding Homo_sapiens 0 510
ENST00000312150 KRT25-001 protein_coding Homo_sapiens 1e-18 99
ENST00000326333 KRT17P2-002 processed_transcript Homo_sapiens 1e-22 111
ENST00000336861 KRT13-002 protein_coding Homo_sapiens 0 1356
ENST00000361566 KRT19-001 protein_coding Homo_sapiens 0 449
ENST00000393974 KRT15-004 protein_coding Homo_sapiens 0 651
ENST00000393976 KRT15-007 protein_coding Homo_sapiens 0 952
ENST00000399211 KRT17P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 436
ENST00000405746 KRT19P1-001 processed_pseudogene Homo_sapiens 0 313
ENST00000417510 KRT16P6-002 processed_transcript Homo_sapiens 2e-23 115
ENST00000420566 KRT17P3-001 unprocessed_pseudogene Homo_sapiens 0 488
ENST00000425692 KRT16P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 396
ENST00000453795 KRT17P6-001 transcribed_unprocessed_pseudogene Homo_sapiens 3e-24 117
ENST00000455635 KRT19-002 protein_coding Homo_sapiens 0 207
ENST00000458290 KRT15-006 protein_coding Homo_sapiens 0 538
ENST00000463128 KRT17-002 protein_coding Homo_sapiens 0 278
ENST00000463447 KRT15-005 retained_intron Homo_sapiens 0 433
ENST00000464634 KRT13-006 nonsense_mediated_decay Homo_sapiens 0 1171
ENST00000468313 KRT13-003 retained_intron Homo_sapiens 0 1179
ENST00000468880 KRT19-005 retained_intron Homo_sapiens 0 215
ENST00000474031 KRT15-008 retained_intron Homo_sapiens 0 645
ENST00000479031 KRT19-004 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000491673 KRT17-004 retained_intron Homo_sapiens 2e-33 147
ENST00000493253 KRT17-003 retained_intron Homo_sapiens 0 298
ENST00000497016 KRT15-002 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000540235 KRT17-201 protein_coding Homo_sapiens 0 427
ENST00000577449 KRT17P1-005 retained_intron Homo_sapiens 0 244
ENST00000577817 KRT17-005 protein_coding Homo_sapiens 4e-35 152
ENST00000580363 KRT17P1-003 processed_transcript Homo_sapiens 6e-23 111
ENST00000584481 KRT16P6-004 processed_transcript Homo_sapiens 9e-37 158
ENST00000587118 KRT13-009 processed_transcript Homo_sapiens 0.00000000000005 82
ENST00000587544 KRT13-005 protein_coding Homo_sapiens 0 1354
ENST00000588319 KRT16-002 retained_intron Homo_sapiens 3e-28 130
ENST00000590038 KRT17-006 protein_coding Homo_sapiens 0 209
ENST00000590425 KRT13-007 protein_coding Homo_sapiens 0 625
ENST00000593067 KRT16-003 protein_coding Homo_sapiens 0 363
ENST00000593096 KRT19-007 protein_coding Homo_sapiens 0 267

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