C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox protein 2, a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000016303 irx2a-001 ENSDARG00000001785 7955 - 16:565648-570195 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000016303
Transcript ID Brain Heart Kidney Muscle
ENSDART00000016303 2.370±1.71 10.571±12.71 2.121±1.25 0.437±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0004 UCNEbase 16:429462-1090747

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 204
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 4.99997e-41 174
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 4.00001e-41 174
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 204
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 198
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 3e-40 171
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 351
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 9.99967e-42 176
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 351
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 198
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 198
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 4e-26 122
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 198
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 6.00036e-42 176
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 9e-38 161
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 198
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 198

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