C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393368 HMGB3P1-001 ENSG00000225336 9606 - 20:34833575-34834462 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaTestisENST00000393368
Transcript ID Brain Liver Placenta Testis
ENST00000393368 0.049±0.00 0.080±0.00 0.055±0.00 0.043±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 579
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 579
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 579
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 579
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 579
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 571
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 475
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 412

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