C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394815 KRT80-002 ENSG00000167767 9606 - 12:52168996-52192000 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverMuscleOvaryPlacentaTestisENST00000394815
Transcript ID Adipose Adrenal Brain Breast Liver Muscle Ovary Placenta Testis
ENST00000394815 0.145±0.00 0.042±0.00 0.024±0.00 1.369±0.00 0.051±0.00 0.262±0.00 0.651±0.04 6.398±2.05 0.515±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JR CIL_0006JR_0001 CGP 12:52069246-52192000
CIL_0006TB CIL_0006TB_0001 CGP 12:52168996-52252186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005737 IDA cytoplasm
GO:0005882 IDA:IEA intermediate filament
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077196 Krt80-201 protein_coding Mus_musculus 0 1461
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 226
ENSMUST00000023720 Krt84-201 protein_coding Mus_musculus 0 204
ENSDART00000137533 krt8-003 retained_intron Danio_rerio 2e-20 106
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 7e-20 104
ENSMUST00000077902 Gfap-201 protein_coding Mus_musculus 9e-19 100
ENSMUST00000067444 Gfap-001 protein_coding Mus_musculus 9e-19 100

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