C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023952 Krt8-201 ENSMUSG00000049382 10090 - 15:101996711-102004342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023952
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023952 43.860±42.61 0.558±0.21 200.505±24.14 1.094±0.21 114.781±43.04 1948.045±184.28 3.173±2.18 44.274±2.61 66.349±18.50 78.423±13.41 0.084±0.04 82.844±14.14 1730.198±1224.75 7.649±3.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038V CIL_00038V_0002 CGP 15:101946004-102004342
CIL_0006T8 CIL_0006T8_0002 CGP 15:101996711-102032026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 TAS cell morphogenesis involved in differentiation
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005882 IDA intermediate filament
GO:0005911 IDA cell-cell junction
GO:0007275 TAS multicellular organismal development
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0030018 IDA Z disc
GO:0032403 IEA protein complex binding
GO:0033209 IGI tumor necrosis factor-mediated signaling pathway
GO:0042383 IDA sarcolemma
GO:0043034 IEA costamere
GO:0045095 IEA keratin filament
GO:0045214 IEA sarcomere organization
GO:0051599 IEA response to hydrostatic pressure
GO:0051707 IMP response to other organism
GO:0060706 IGI cell differentiation involved in embryonic placenta development
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 IDA cell periphery
GO:0097110 IEA scaffold protein binding
GO:0097191 IMP extrinsic apoptotic signaling pathway
GO:0097284 IMP hepatocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081223 krt5-201 protein_coding Danio_rerio 0 427
ENSDART00000129044 krt5-001 protein_coding Danio_rerio 0 427
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.00000000002 75
ENST00000224237 VIM-001 protein_coding Homo_sapiens 0.000000004 68
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0 521
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 0 521
ENST00000257901 KRT85-001 protein_coding Homo_sapiens 0 287
ENST00000293308 KRT8-002 protein_coding Homo_sapiens 0 1591
ENST00000293525 KRT86-201 protein_coding Homo_sapiens 0 298
ENST00000293670 KRT83-001 protein_coding Homo_sapiens 0 220
ENST00000305620 KRT74-001 protein_coding Homo_sapiens 4e-36 158
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0 368
ENST00000313234 KRT80-001 protein_coding Homo_sapiens 0 226
ENST00000327741 KRT81-001 protein_coding Homo_sapiens 0 291
ENST00000330722 KRT6A-001 protein_coding Homo_sapiens 0 549
ENST00000392131 KRT8P40-001 processed_pseudogene Homo_sapiens 0 484
ENST00000394815 KRT80-002 protein_coding Homo_sapiens 0 226
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 0 1146
ENST00000399259 KRT8P6-001 processed_pseudogene Homo_sapiens 0 623
ENST00000406052 KRT8P43-001 processed_pseudogene Homo_sapiens 0 1064
ENST00000409686 KRT8P11-001 processed_pseudogene Homo_sapiens 0 1286
ENST00000413425 KRT8P18-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000414254 KRT8P14-001 processed_pseudogene Homo_sapiens 0 1127
ENST00000414328 KRT8P45-001 processed_pseudogene Homo_sapiens 0 1328
ENST00000423953 KRT8P20-001 processed_pseudogene Homo_sapiens 0 1022
ENST00000423955 KRT86-001 protein_coding Homo_sapiens 0 298
ENST00000425226 KRT8P15-001 processed_pseudogene Homo_sapiens 0 1086
ENST00000434750 KRT8P8-001 processed_pseudogene Homo_sapiens 0 1284
ENST00000438938 KRT8P51-001 processed_pseudogene Homo_sapiens 0 289
ENST00000441370 KRT8P38-001 processed_pseudogene Homo_sapiens 0 617
ENST00000449849 AC010900.2-001 processed_pseudogene Homo_sapiens 0 747
ENST00000450021 KRT8P10-001 processed_pseudogene Homo_sapiens 0 1234
ENST00000451609 KRT8P37-001 processed_pseudogene Homo_sapiens 0 1190
ENST00000453110 KRT8P17-001 processed_pseudogene Homo_sapiens 0 1151
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 1061
ENST00000466011 KRT80-003 retained_intron Homo_sapiens 0 226
ENST00000472924 KRT8P12-001 transcribed_processed_pseudogene Homo_sapiens 0 754
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 0 1048
ENST00000478317 VIM-004 processed_transcript Homo_sapiens 0.000000002 68
ENST00000478746 VIM-005 processed_transcript Homo_sapiens 0.000000002 68
ENST00000483942 KRT8P35-001 processed_pseudogene Homo_sapiens 0 1114
ENST00000485947 VIM-007 processed_transcript Homo_sapiens 0.000000003 68
ENST00000487938 VIM-002 nonsense_mediated_decay Homo_sapiens 0.000000005 68
ENST00000489121 KRT8P36-001 processed_pseudogene Homo_sapiens 0 1221
ENST00000504812 KRT8P31-001 processed_pseudogene Homo_sapiens 0 1188
ENST00000508125 KRT8P33-001 processed_pseudogene Homo_sapiens 0 1358
ENST00000509735 KRT8P4-001 processed_pseudogene Homo_sapiens 0 859
ENST00000512037 KRT8P46-001 processed_pseudogene Homo_sapiens 0 1144
ENST00000512863 KRT8P32-001 processed_pseudogene Homo_sapiens 0 1221
ENST00000515599 KRT8P48-001 processed_pseudogene Homo_sapiens 0 996
ENST00000519669 KRT8P3-001 processed_pseudogene Homo_sapiens 0 1459
ENST00000533003 KRT8P7-001 processed_pseudogene Homo_sapiens 0 1358
ENST00000533985 KRT8P41-001 processed_pseudogene Homo_sapiens 0 1140
ENST00000544301 VIM-201 protein_coding Homo_sapiens 0.000000005 68
ENST00000546583 KRT8-005 retained_intron Homo_sapiens 0 926
ENST00000546826 KRT8-013 protein_coding Homo_sapiens 0 933
ENST00000546897 KRT8-003 protein_coding Homo_sapiens 0 1587
ENST00000546900 KRT8-017 protein_coding Homo_sapiens 0 505
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0 219
ENST00000547031 KRT8-020 retained_intron Homo_sapiens 0 835
ENST00000547176 KRT8-019 nonsense_mediated_decay Homo_sapiens 2e-29 132
ENST00000547413 KRT8-016 protein_coding Homo_sapiens 0 568
ENST00000548998 KRT8-014 protein_coding Homo_sapiens 0 859
ENST00000549176 KRT8-018 retained_intron Homo_sapiens 0 828
ENST00000549343 KRT74-003 protein_coding Homo_sapiens 4e-36 158
ENST00000550170 KRT8-008 retained_intron Homo_sapiens 0 926
ENST00000551916 KRT8P19-001 processed_pseudogene Homo_sapiens 0 1158
ENST00000552150 KRT8-004 protein_coding Homo_sapiens 0 1587
ENST00000552551 KRT8-001 protein_coding Homo_sapiens 0 1591
ENST00000553310 KRT86-002 protein_coding Homo_sapiens 9e-31 137
ENST00000557533 KRT8P1-001 processed_pseudogene Homo_sapiens 0 989
ENST00000558927 KRT8P9-001 processed_pseudogene Homo_sapiens 0 1251
ENST00000560090 KRT8P23-001 processed_pseudogene Homo_sapiens 0 1070
ENST00000560290 KRT8P24-001 processed_pseudogene Homo_sapiens 0 1079
ENST00000562022 KRT8P50-001 processed_pseudogene Homo_sapiens 0 1182
ENST00000562317 KRT8P22-001 processed_pseudogene Homo_sapiens 0 1122
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 0 824
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 0 1053
ENST00000604166 KRT8P49-001 processed_pseudogene Homo_sapiens 0 1175
ENST00000604727 KRT8P47-001 processed_pseudogene Homo_sapiens 0 1120
ENST00000615839 KRT81-201 protein_coding Homo_sapiens 0 291
ENST00000620027 KRT123P-001 transcribed_unprocessed_pseudogene Homo_sapiens 1e-22 111
ENST00000621314 KRT123P-002 processed_transcript Homo_sapiens 0.00000000009 71
ENST00000622375 TTBK2-201 protein_coding Homo_sapiens 0 695

Loading