C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11604
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121487 Gm11604-001 ENSMUSG00000085897 10090 + 11:98185366-98186107 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000121487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121487 0.316±0.14 0.421±0.29 0.124±0.00 0.150±0.09 0.408±0.20 0.171±0.04 0.141±0.09 0.146±0.08 0.190±0.07 0.184±0.08 0.584±0.42 0.259±0.12 0.355±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007D6 CIL_0007D6_0002 CGP 11:98082556-98193293
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0007D3 CIL_0007D3_0002 CGP 11:98152154-98278504

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315377 RPS6-003 protein_coding Homo_sapiens 0 761
ENST00000366455 AC007618.3-001 processed_pseudogene Homo_sapiens 0 331
ENST00000380381 RPS6-004 protein_coding Homo_sapiens 2e-40 171
ENST00000380384 RPS6-002 protein_coding Homo_sapiens 0 761
ENST00000380394 RPS6-001 protein_coding Homo_sapiens 0 765
ENST00000393214 AC004386.4-001 processed_pseudogene Homo_sapiens 0 475
ENST00000397390 RP11-146N23.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000422735 RP11-229M1.2-001 processed_pseudogene Homo_sapiens 0 597
ENST00000454208 RPS6P2-001 processed_pseudogene Homo_sapiens 0 398
ENST00000463969 RP11-864G5.1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000464444 AD000092.3-001 processed_pseudogene Homo_sapiens 0 599
ENST00000471756 RP11-791G16.2-001 transcribed_processed_pseudogene Homo_sapiens 0 353
ENST00000472008 RP11-399D15.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000475592 RP11-392P7.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000479691 RPS6P16-001 processed_pseudogene Homo_sapiens 0 499
ENST00000481577 RP11-771F20.1-001 processed_pseudogene Homo_sapiens 0 619
ENST00000488045 RP11-791G16.2-002 processed_transcript Homo_sapiens 0 353
ENST00000498815 RPS6-005 processed_transcript Homo_sapiens 0 298
ENST00000572071 RP11-399D15.1-001 processed_pseudogene Homo_sapiens 0 372

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