C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412087 HNRNPA1P27-001 ENSG00000233680 9606 - X:100887636-100888590 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000412087
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000412087 0.187±0.00 0.379±0.00 0.218±0.00 0.091±0.00 0.139±0.00 0.055±0.00 0.183±0.00 0.265±0.10 0.094±0.00 0.120±0.09 0.075±0.03 0.123±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B9 CIL_0007B9_0001 CGP X:100843324-100929433

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 1194
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 1194
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 1149
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 1118
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 1116
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 944
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 924
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 924
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 785
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 634
ENSDART00000053267 hnrnpa1b-001 protein_coding Danio_rerio 0 217
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 5e-31 139

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