C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413027 RPL3P2-001 ENSG00000227939 9606 + 6:31280317-31281519 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyMuscleOvaryPlacentaTestisENST00000413027
Transcript ID Adipose Adrenal Brain Breast Kidney Muscle Ovary Placenta Testis
ENST00000413027 0.248±0.00 0.288±0.00 0.069±0.00 0.325±0.00 0.099±0.00 0.221±0.00 0.115±0.04 0.085±0.02 0.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0001 CGP 6:31268749-31357188

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1319
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1317
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1315
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1306
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1262
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 959
ENSMUST00000179745 Gm8266-001 processed_pseudogene Mus_musculus 0 941
ENSMUST00000179984 Gm2871-001 processed_pseudogene Mus_musculus 0 941
ENSMUST00000168436 Gm8323-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000178243 Gm4904-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000178911 Gm8324-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000181797 Gm3466-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000169120 Gm8164-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000178248 Gm2877-001 processed_pseudogene Mus_musculus 0 935
ENSMUST00000180022 Gm8305-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000167577 Gm7352-001 processed_pseudogene Mus_musculus 0 929
ENSMUST00000165448 Gm8379-001 processed_pseudogene Mus_musculus 0 929
ENSMUST00000165508 Gm8340-001 processed_pseudogene Mus_musculus 0 924
ENSMUST00000181256 Gm2907-001 processed_pseudogene Mus_musculus 0 924
ENSMUST00000164656 Gm3326-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 811
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 793
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 741
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 0 531
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 339
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 0 191

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