C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5879
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089501 Gm5879-201 ENSMUSG00000068262 10090 - 6:87764993-87766204 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000089501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000089501 0.089±0.04 0.129±0.06 0.143±0.01 0.676±0.91 0.076±0.02 0.122±0.05 0.030±0.00 0.100±0.06 0.804±1.93 0.049±0.00 0.126±0.06 0.112±0.07 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B7 CIL_0003B7_0002 CGP 6:87730869-87779762

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 1487
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 1483
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 1197
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1306
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1306
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 518
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 863
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1312
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1293
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 1101
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 1086
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1282
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1317
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 1018
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1282
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 1236
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 0 217
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 1037
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 0 217
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 1249
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 268
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 1125
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 418

Loading