C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117131 Rpl3-ps2-001 ENSMUSG00000084131 10090 + X:74170653-74171866 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000117131
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000117131 0.325±0.22 0.091±0.03 0.101±0.01 0.017±0.01 0.477±0.57 0.137±0.09 0.095±0.04 0.128±0.15 0.060±0.04 0.051±0.02 0.238±0.10 0.215±0.17 0.079±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L7 CIL_0001L7_0002 CGP X:74150944-74208500

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 1495
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 1491
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 1205
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1319
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1308
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 534
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 1.96182e-44 183
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 854
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1314
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1295
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 1131
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1284
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1319
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 1020
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 1284
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 1232
ENST00000464182 RPL3-019 retained_intron Homo_sapiens 0 222
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 1064
ENST00000467105 RPL3-004 retained_intron Homo_sapiens 0 222
ENST00000467870 RPL3P3-001 processed_pseudogene Homo_sapiens 0 1251
ENST00000473638 RPL3-018 retained_intron Homo_sapiens 0 274
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 1110
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 429

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