C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000011251 rpl3-001 ENSDARG00000003599 7955 - 3:30018332-30022483 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000011251
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000011251 162.739±170.93 1826.680±237.58 608.264±856.52 671.075±0.00 806.685±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0030529 IEA ribonucleoprotein complex
GO:0031017 IMP exocrine pancreas development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 926
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 918
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 697
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 494
ENST00000216146 RPL3-001 protein_coding Homo_sapiens 0 952
ENST00000401609 RPL3-003 protein_coding Homo_sapiens 0 948
ENST00000402527 RPL3-009 protein_coding Homo_sapiens 0 743
ENST00000413027 RPL3P2-001 processed_pseudogene Homo_sapiens 0 793
ENST00000414649 RPL3P2-001 processed_pseudogene Homo_sapiens 0 787
ENST00000417615 RPL3P4-001 processed_pseudogene Homo_sapiens 0 387
ENST00000420536 RPL3-014 nonsense_mediated_decay Homo_sapiens 2e-34 150
ENST00000427905 RPL3-011 protein_coding Homo_sapiens 0 468
ENST00000428665 RPL3P2-001 processed_pseudogene Homo_sapiens 0 793
ENST00000432928 RPL3P8-001 processed_pseudogene Homo_sapiens 0 464
ENST00000434677 RPL3P2-001 processed_pseudogene Homo_sapiens 0 785
ENST00000436852 RPL3P12-001 processed_pseudogene Homo_sapiens 0 621
ENST00000437106 RPL3P1-001 processed_pseudogene Homo_sapiens 0 640
ENST00000445022 RPL3P2-001 processed_pseudogene Homo_sapiens 0 780
ENST00000449035 RPL3P2-001 processed_pseudogene Homo_sapiens 0 798
ENST00000453303 RPL3-012 protein_coding Homo_sapiens 0 614
ENST00000454216 RPL3P2-001 processed_pseudogene Homo_sapiens 0 780
ENST00000463217 RPL3P9-001 processed_pseudogene Homo_sapiens 0 665
ENST00000465618 RPL3-002 processed_transcript Homo_sapiens 0 712
ENST00000474162 RPL3P6-001 processed_pseudogene Homo_sapiens 0 595
ENST00000476002 RPL3P10-001 processed_pseudogene Homo_sapiens 0 298
ENST00000484358 RPL3-015 retained_intron Homo_sapiens 0 231

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