C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3 pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417615 RPL3P4-001 ENSG00000232573 9606 - 14:98972879-98973301 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000417615
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000417615 2.258±0.00 0.251±0.00 2.198±0.00 3.609±0.00 2.852±0.00 5.286±0.00 0.825±0.00 0.039±0.00 8.440±6.78 0.129±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0001 UCNEbase 14:98137606-99417500
CIL_00080U CIL_00080U_0001 VISTA 14:98699863-99300807

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 540
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 540
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 540
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 518
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 507
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 387
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 324

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