C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428039 NPM1P24-001 ENSG00000215086 9606 - 10:72917641-72918534 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLungMuscleOvaryTestisENST00000428039
Transcript ID Adipose Colon Kidney Lung Muscle Ovary Testis
ENST00000428039 0.012±0.00 0.011±0.00 0.368±0.00 0.012±0.00 0.011±0.00 0.027±0.00 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QA CIL_0008QA_0001 VISTA 10:72591086-73192639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 957
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 802
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 800
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 562
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 451
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 3e-37 159
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 252
ENSMUST00000185549 RP23-341D24.2-001 processed_pseudogene Mus_musculus 0.0000003 60

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