C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437106 RPL3P1-001 ENSG00000228149 9606 - 21:36168970-36170180 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000437106
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000437106 0.190±0.00 0.161±0.00 0.335±0.00 0.166±0.03 0.173±0.00 0.154±0.04 0.014±0.00 0.184±0.00 0.088±0.00 0.083±0.00 0.041±0.00 0.062±0.04 0.023±0.00 0.071±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZB CIL_0006ZB_0001 CGP 21:36134912-36294274
CIL_0006ZC CIL_0006ZC_0001 CGP 21:36156782-36386148

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1103
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1101
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1086
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1077
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1026
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 802
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 640
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000185330 RP23-267J24.4-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 492
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 1e-37 161

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