C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: metastasis associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438610 MTA1-004 ENSG00000182979 9606 + 14:105420016-105470238 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000438610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000438610 12.493±0.00 13.450±0.00 0.401±0.00 5.034±4.15 13.241±0.00 18.494±0.00 6.944±0.00 3.779±3.08 3.664±0.00 9.608±0.00 17.764±0.00 9.818±7.25 8.873±0.63 25.353±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q6 CIL_0004Q6_0001 CGP 14:105300563-105450106
CIL_0006H9 CIL_0006H9_0001 CGP 14:105398579-105470729
CIL_0006HA CIL_0006HA_0001 CGP 14:105419820-105480170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 ISS core promoter sequence-specific DNA binding
GO:0001047 IDA core promoter binding
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IMP transcription coactivator activity
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005874 IDA microtubule
GO:0006302 IMP double-strand break repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 TAS signal transduction
GO:0008270 IEA zinc ion binding
GO:0010212 IDA response to ionizing radiation
GO:0032496 ISS response to lipopolysaccharide
GO:0032922 ISS circadian regulation of gene expression
GO:0040029 IMP regulation of gene expression, epigenetic
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045475 ISS locomotor rhythm
GO:0050727 ISS regulation of inflammatory response
GO:1902499 IDA positive regulation of protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130926 Mta1-004 processed_transcript Mus_musculus 0 2706
ENSMUST00000109727 Mta1-202 protein_coding Mus_musculus 0 1524
ENSMUST00000109723 Mta1-002 protein_coding Mus_musculus 0 1524
ENSMUST00000009099 Mta1-001 protein_coding Mus_musculus 0 1524
ENSMUST00000109726 Mta1-201 protein_coding Mus_musculus 0 1186
ENSMUST00000069690 Mta1-003 protein_coding Mus_musculus 0 1186
ENSDART00000122665 mta3-004 protein_coding Danio_rerio 0 405
ENSDART00000127454 mta3-001 protein_coding Danio_rerio 0 405
ENSDART00000077180 mta3-002 protein_coding Danio_rerio 0 405
ENSMUST00000177069 Mta3-003 nonsense_mediated_decay Mus_musculus 0 383
ENSMUST00000112352 Mta3-004 protein_coding Mus_musculus 0 383
ENSMUST00000112350 Mta3-002 protein_coding Mus_musculus 0 383
ENSMUST00000112349 Mta3-005 protein_coding Mus_musculus 0 381
ENSMUST00000067826 Mta3-001 protein_coding Mus_musculus 0 375
ENSMUST00000176816 Mta3-007 protein_coding Mus_musculus 0 351
ENSDART00000156281 MTA1-003 retained_intron Danio_rerio 5.99756e-43 180
ENSDART00000045583 MTA1-002 protein_coding Danio_rerio 5.99756e-43 180
ENSDART00000157183 MTA1-001 retained_intron Danio_rerio 5.99756e-43 180
ENSMUST00000134488 Mta1-006 processed_transcript Mus_musculus 1.99965e-42 178

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