C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445304 RPL17P1-001 ENSG00000229500 9606 - 20:20253303-20253838 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartTestisENST00000445304
Transcript ID Adipose Adrenal Bladder Breast Heart Testis
ENST00000445304 0.026±0.00 0.027±0.00 0.243±0.00 0.110±0.00 0.101±0.00 0.169±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Z5 CIL_0007Z5_0001 VISTA 20:19702996-20303586
CIL_0001TY CIL_0001TY_0001 CGP 20:20034368-20360702
CIL_0003Q7 CIL_0003Q7_0001 CGP 20:20052514-20370949
CIL_0007R6 CIL_0007R6_0001 VISTA 20:20192309-20793556

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 359
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 303
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 252

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