C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 7867
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189856 RP23-110B5.4-001 ENSMUSG00000100351 10090 - 1:93306694-93307239 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000189856
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000189856 0.287±0.04 0.248±0.06 0.792±0.29 0.256±0.10 0.267±0.01 0.099±0.00 0.229±0.02 0.277±0.09 0.194±0.00 0.087±0.00 0.348±0.18 0.232±0.08 0.550±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000474 CIL_000474_0002 CGP 1:93299211-93343482

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 460
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 472
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 490
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 510
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 601
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 326
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 512
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 612
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 403
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 564
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 329
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 7.00005e-41 171
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000445304 RPL17P1-001 processed_pseudogene Homo_sapiens 0 353
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 303
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 505
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 529
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 507
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 470
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 521
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 451
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 601
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 449
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 375
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 534
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 248
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 564
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 612
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 612
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 460
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 584
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 612
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 401
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 466
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 518
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 335
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 226
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 442
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 580
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 521
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 555
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 390
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 2e-34 148
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 279
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 412
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 555
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 612
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 612

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