C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13665
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120830 Gm13665-001 ENSMUSG00000082455 10090 + 2:73116748-73117275 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartLiverPlacentaTestisENSMUST00000120830
Transcript ID Adipose Adrenal Bladder Breast Heart Liver Placenta Testis
ENSMUST00000120830 0.131±0.00 0.675±0.00 0.111±0.00 0.164±0.00 0.205±0.00 0.069±0.01 0.219±0.00 0.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OE CIL_0007OE_0002 UCNEbase 2:72378722-73287933
CIL_0008JW CIL_0008JW_0002 VISTA 2:72839371-73441413
CIL_0008K1 CIL_0008K1_0002 VISTA 2:72842671-73444272
CIL_0008S8 CIL_0008S8_0002 VISTA 2:72879758-73480791
CIL_00096H CIL_00096H_0002 VISTA 2:72968418-73569496
CIL_0008GI CIL_0008GI_0002 VISTA 2:72975594-73577184
CIL_0008K2 CIL_0008K2_0002 VISTA 2:72979567-73580473
CIL_0004JE CIL_0004JE_0002 CGP 2:73092801-73284706

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 479
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 451
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 453
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 525
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 318
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 534
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 9e-36 154
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000445304 RPL17P1-001 processed_pseudogene Homo_sapiens 0 359
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 243
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 496
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 331
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 464
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 420
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 529
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 372
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 302
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 497
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 265
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 496
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 534
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 534
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 479
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 527
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 534
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 344
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 475
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 527
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 335
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 250
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 374
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 505
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 527
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 484
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 233
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 355
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 484
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 534
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 534

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