C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450208 RP11-193H5.2-001 ENSG00000243781 9606 + 1:237926831-237927605 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryTestisENST00000450208
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000450208 0.152±0.00 0.034±0.00 0.030±0.00 0.152±0.00 0.102±0.00 0.031±0.00 0.036±0.00 0.035±0.00 0.029±0.00 0.082±0.00 0.271±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 739
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 739
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 623
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 568
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 568
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 527
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 516
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 507
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 435
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 420
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 350
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 348
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 281

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