C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 2, smooth muscle, aorta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000109883 ACTC1 (2 of 2)-002 ENSDARG00000079111 7955 + 25:14370303-14386175 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000109883
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000109883 2.169±1.16 4.108±2.59 17.090±0.00 0.056±0.00 188.679±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1114
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1033
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 865
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1061
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 710
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 800
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 941
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 865
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 388
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 704
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1061
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 466
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 296
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 507
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 296
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 715
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 1e-39 167
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 507
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 507
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 536
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 507
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 298
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 263
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 307
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 305
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 632
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 994
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1042
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 935
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 863
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1083
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1051
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 771
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1083
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 815
ENST00000414620 ACTB-010 protein_coding Homo_sapiens 0 198
ENST00000415557 ACTA2-002 protein_coding Homo_sapiens 0 375
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 268
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 675
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 508
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 326
ENST00000425123 ACTG1P4-001 processed_pseudogene Homo_sapiens 0 427
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000429756 ACTG2-009 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 436
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 647
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 815
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 276
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 420
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 520
ENST00000458159 ACTA2-003 protein_coding Homo_sapiens 0 375
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 994
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 305
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 460
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 529
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 261
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 686
ENST00000488967 ACTA2-005 processed_transcript Homo_sapiens 0 244
ENST00000491397 AMY2B-003 processed_transcript Homo_sapiens 0 429
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 664
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 385
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 741
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 311
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 4e-37 159
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 292
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 494
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 411
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 863
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 863
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 483
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 863
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 486
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 797
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 322
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 863
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 617
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 863

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