C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 1a, skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000052838 acta1a-001 ENSDARG00000036371 7955 + 1:54512688-54520286 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000052838
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000052838 0.454±0.47 194.568±183.40 1.569±0.00 2.719±0.00 3.740±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1301
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1153
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 303
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 985
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 1011
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 872
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 942
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1129
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 300
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1077
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 985
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 442
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 867
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 996
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 1011
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 527
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 322
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 728
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 206
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 326
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 1e-37 159
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 318
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 355
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 353
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 769
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 375
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 660
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1103
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1266
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1070
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1014
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1066
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 880
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 852
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 580
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1303
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 896
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 857
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1066
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 846
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 852
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 553
ENST00000415557 ACTA2-002 protein_coding Homo_sapiens 0 381
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 281
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 833
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 710
ENST00000418987 RP11-394D2.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 405
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 671
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 370
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 438
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 531
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 603
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 483
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 756
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 241
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 438
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 300
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 798
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 507
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 874
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 676
ENST00000458159 ACTA2-003 protein_coding Homo_sapiens 0 381
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1103
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 357
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 518
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 544
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 307
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 808
ENST00000488967 ACTA2-005 processed_transcript Homo_sapiens 0 195
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 765
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 850
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 279
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 361
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 292
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 556
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 326
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 619
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 464
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1014
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1014
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 571
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1014
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 575
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 970
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 344
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1014
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 728
ENST00000587663 ACTBP9-001 processed_pseudogene Homo_sapiens 0 760
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1014

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