C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5388
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120059 Gm5388-001 ENSMUSG00000081350 10090 - X:51218877-51219993 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000120059
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000120059 0.049±0.02 0.057±0.00 0.045±0.05 0.070±0.06 0.061±0.02 0.026±0.00 0.041±0.02 0.015±0.01 0.032±0.00 0.101±0.03 0.210±0.16 0.075±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000T0 CIL_0000T0_0002 CGP X:51117269-51681856

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 983
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 977
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 977
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 811
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 797
ENSDART00000080664 protein_coding Danio_rerio 0 771
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 765
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 752
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 695
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 682
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 643
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 571
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 549
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 813
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1075
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1157
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 798
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 939
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 928
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 420
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 787
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 911
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 782
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 928
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 798
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 645
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 928
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 645
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 778
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 296
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 876
ENST00000417985 ACTBP1-001 processed_pseudogene Homo_sapiens 0 701
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 767
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 440
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 782
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 442
ENST00000423391 ACTBL2-001 protein_coding Homo_sapiens 0 761
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 593
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 701
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 776
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 673
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 497
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 809
ENST00000437653 RP11-809F4.2-001 processed_pseudogene Homo_sapiens 0 571
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 645
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 340
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 475
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 315
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 837
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 604
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 944
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 876
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 699
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 211
ENST00000473257 ACTB-011 processed_transcript Homo_sapiens 0 429
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 532
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 302
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 857
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 758
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 712
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 641
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 889
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 287
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 374
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 403
ENST00000567299 CTC-543D15.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 398
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 647
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 571
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 676
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1157
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 736
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1157
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 726
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1157
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 730
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1051
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 427
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1157
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 863
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1157

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