C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha, cardiac muscle 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000055136 actc1b-201 ENSDARG00000037840 7955 - 17:758925-766504 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000055136
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000055136 23.381±8.84 14.789±7.26 68.063±86.53 7.886±0.00 34707.602±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1456
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1131
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 326
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 963
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 854
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 904
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1081
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 963
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 435
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 848
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 974
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 494
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 601
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 3e-36 158
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 316
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 195
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 2e-36 158
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 2e-36 158
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 3e-36 158
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 320
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 307
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 353
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 351
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 736
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 734
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 344
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 647
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1171
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1291
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1072
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1118
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1234
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 946
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 918
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 520
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1290
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 957
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 929
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1234
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 970
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 918
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 579
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 717
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 267
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 883
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 760
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 412
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 514
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 614
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 682
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 449
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 795
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 970
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 254
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 416
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 285
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 817
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 527
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 941
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 758
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1171
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 747
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 287
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 490
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 285
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 773
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 728
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 676
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 584
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 898
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 270
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 394
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 294
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 579
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 311
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 628
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 451
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1118
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1118
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 577
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1118
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 580
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1068
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 344
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1118
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 761
ENST00000603793 CTD-2026C7.1-001 transcribed_processed_pseudogene Homo_sapiens 0 377
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1118

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