C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, alpha 1, skeletal muscle
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034453 Acta1-201 ENSMUSG00000031972 10090 - 8:123891767-123894736 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RZ CIL_0005RZ_0002 CGP 8:123840831-123894736
CIL_0005RY CIL_0005RY_0002 CGP 8:123891767-123949265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 ISS stress fiber
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IEA extracellular space
GO:0005865 TAS striated muscle thin filament
GO:0005884 ISS actin filament
GO:0009612 IEA response to mechanical stimulus
GO:0009991 IEA response to extracellular stimulus
GO:0010226 IEA response to lithium ion
GO:0015629 IEA actin cytoskeleton
GO:0016049 IEA cell growth
GO:0030017 IEA sarcomere
GO:0030240 ISS skeletal muscle thin filament assembly
GO:0043234 ISO protein complex
GO:0043503 IEA skeletal muscle fiber adaptation
GO:0048545 IEA response to steroid hormone
GO:0048741 IDA skeletal muscle fiber development
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1456
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1378
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1301
ENSDART00000080664 protein_coding Danio_rerio 0 1267
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1214
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1197
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 1114
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1109
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 1109
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1094
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1094
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 1014
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 852
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 0 551
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 547
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 0 442
ENSDART00000134924 actb2-004 retained_intron Danio_rerio 0 346
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 346
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 346
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 296
ENST00000224784 ACTA2-001 protein_coding Homo_sapiens 0 1229
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 1323
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 1149
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 1195
ENST00000345517 ACTG2-001 protein_coding Homo_sapiens 0 1206
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 1064
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 1037
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 619
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 1550
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 1050
ENST00000403258 ACTBP8-001 processed_pseudogene Homo_sapiens 0 846
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 1042
ENST00000409624 ACTG2-002 protein_coding Homo_sapiens 0 1206
ENST00000409731 ACTG2-008 protein_coding Homo_sapiens 0 944
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 1037
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 616
ENST00000415557 ACTA2-002 protein_coding Homo_sapiens 0 464
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 291
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 974
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 822
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 448
ENST00000423183 ACTG1P12-001 processed_pseudogene Homo_sapiens 0 835
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 582
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 789
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 737
ENST00000431536 RP4-706L14.2-001 processed_pseudogene Homo_sapiens 0 701
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 486
ENST00000436287 ACTBP11-001 processed_pseudogene Homo_sapiens 0 876
ENST00000438902 ACTG2-005 nonsense_mediated_decay Homo_sapiens 0 944
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 252
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 507
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 309
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 865
ENST00000450208 RP11-193H5.2-001 transcribed_processed_pseudogene Homo_sapiens 0 623
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 1059
ENST00000457622 ACTG1P9-001 processed_pseudogene Homo_sapiens 0 837
ENST00000458159 ACTA2-003 protein_coding Homo_sapiens 0 464
ENST00000458208 ACTA2-201 protein_coding Homo_sapiens 0 1229
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 789
ENST00000464611 ACTB-013 processed_transcript Homo_sapiens 0 316
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 532
ENST00000480297 ACTA2-006 processed_transcript Homo_sapiens 0 652
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 300
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 828
ENST00000488967 ACTA2-005 processed_transcript Homo_sapiens 0 239
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 791
ENST00000502306 CTD-2313D3.1-001 processed_pseudogene Homo_sapiens 0 604
ENST00000507366 CTC-512J14.7-001 processed_pseudogene Homo_sapiens 0 723
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 941
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 305
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 418
ENST00000557860 ACTC1-003 processed_transcript Homo_sapiens 0 538
ENST00000560563 ACTC1-004 retained_intron Homo_sapiens 0 366
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 327
ENST00000570019 RP11-602M11.3-001 processed_pseudogene Homo_sapiens 0 597
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 370
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 678
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 505
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 1195
ENST00000574671 ACTG1-008 retained_intron Homo_sapiens 0 811
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 1195
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 638
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 1195
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 641
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 1134
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 392
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 1195
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 824
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 1195

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