C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021062 Ddx5-001 ENSMUSG00000020719 10090 - 11:106780355-106788532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021062
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021062 40.558±14.35 73.258±8.14 150.317±65.35 38.952±1.81 31.452±5.67 23.242±1.28 41.094±8.16 41.881±17.43 69.738±13.34 40.552±3.58 91.701±57.44 79.591±32.90 73.549±39.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0002 CGP 11:106768253-106789185
CIL_00012F CIL_00012F_0002 CGP 11:106780355-106819930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0001701 IMP in utero embryonic development
GO:0003712 IDA transcription cofactor activity
GO:0003713 IEA transcription coactivator activity
GO:0004004 IEA ATP-dependent RNA helicase activity
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005634 IC nucleus
GO:0005730 IEA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0007623 IMP circadian rhythm
GO:0016020 IEA membrane
GO:0019899 IEA enzyme binding
GO:0030331 IEA estrogen receptor binding
GO:0030529 ISO ribonucleoprotein complex
GO:0033148 IEA positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 IEA pre-mRNA binding
GO:0043517 IEA positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 IEA poly(A) RNA binding
GO:0045069 IEA regulation of viral genome replication
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048306 IEA calcium-dependent protein binding
GO:0050681 IEA androgen receptor binding
GO:0060765 IEA regulation of androgen receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0072332 IEA intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225792 DDX5-001 protein_coding Homo_sapiens 0 3461
ENST00000450599 DDX5-006 protein_coding Homo_sapiens 0 2660
ENST00000540698 DDX5-003 nonsense_mediated_decay Homo_sapiens 0 2926
ENST00000577787 DDX5-019 protein_coding Homo_sapiens 0 749
ENST00000577922 DDX5-010 protein_coding Homo_sapiens 0 941
ENST00000578190 DDX5-027 protein_coding Homo_sapiens 0 577
ENST00000578400 DDX5-028 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000578491 DDX5-023 processed_transcript Homo_sapiens 0 636
ENST00000578758 DDX5-030 retained_intron Homo_sapiens 0 911
ENST00000578804 DDX5-005 protein_coding Homo_sapiens 0 2771
ENST00000579091 DDX5-014 protein_coding Homo_sapiens 0 516
ENST00000579461 DDX5-029 retained_intron Homo_sapiens 0 532
ENST00000579996 DDX5-007 protein_coding Homo_sapiens 0 712
ENST00000580026 DDX5-031 processed_transcript Homo_sapiens 0 750
ENST00000581230 DDX5-002 retained_intron Homo_sapiens 0 1853
ENST00000581237 DDX5-032 processed_transcript Homo_sapiens 0 625
ENST00000581551 DDX5-022 retained_intron Homo_sapiens 0 534
ENST00000581693 DDX5-004 nonsense_mediated_decay Homo_sapiens 0 3048
ENST00000581697 DDX5-012 protein_coding Homo_sapiens 0 651
ENST00000581806 DDX5-009 protein_coding Homo_sapiens 0 595
ENST00000582326 DDX5-020 retained_intron Homo_sapiens 0 706
ENST00000583201 DDX5-021 retained_intron Homo_sapiens 0 715
ENST00000583212 DDX5-015 protein_coding Homo_sapiens 0 409
ENST00000583239 DDX5-013 protein_coding Homo_sapiens 0 542
ENST00000583562 DDX5-016 retained_intron Homo_sapiens 0 274
ENST00000583894 DDX5-017 retained_intron Homo_sapiens 0 263
ENST00000584279 DDX5-011 protein_coding Homo_sapiens 0 560
ENST00000584549 DDX5-018 retained_intron Homo_sapiens 0 505
ENST00000585060 DDX5-026 protein_coding Homo_sapiens 0 444
ENST00000585111 DDX5-008 protein_coding Homo_sapiens 0 244
ENST00000585223 DDX5-025 retained_intron Homo_sapiens 0 366
ENST00000585317 DDX5-024 retained_intron Homo_sapiens 0 200

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