C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133426 Ddx5-002 ENSMUSG00000020719 10090 - 11:106781548-106788494 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000133426
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000133426 106.555±11.37 203.310±24.11 125.591±30.91 91.521±12.65 50.335±6.45 67.900±6.11 57.667±4.58 50.789±20.24 143.788±20.95 78.905±10.68 97.818±51.14 62.454±22.31 63.059±3.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012I CIL_00012I_0002 CGP 11:106768253-106789185
CIL_00012F CIL_00012F_0002 CGP 11:106780355-106819930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0003712 IDA transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IC nucleus
GO:0006200 IEA ATP catabolic process
GO:0007623 IMP circadian rhythm
GO:0008026 IEA ATP-dependent helicase activity
GO:0030529 ISO ribonucleoprotein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225792 DDX5-001 protein_coding Homo_sapiens 0 1853
ENST00000450599 DDX5-006 protein_coding Homo_sapiens 0 1554
ENST00000540698 DDX5-003 nonsense_mediated_decay Homo_sapiens 0 1554
ENST00000577787 DDX5-019 protein_coding Homo_sapiens 0 749
ENST00000577922 DDX5-010 protein_coding Homo_sapiens 0 941
ENST00000578190 DDX5-027 protein_coding Homo_sapiens 0 577
ENST00000578400 DDX5-028 nonsense_mediated_decay Homo_sapiens 0 440
ENST00000578491 DDX5-023 processed_transcript Homo_sapiens 0 636
ENST00000578758 DDX5-030 retained_intron Homo_sapiens 0 715
ENST00000578804 DDX5-005 protein_coding Homo_sapiens 0 1729
ENST00000579091 DDX5-014 protein_coding Homo_sapiens 0 516
ENST00000579461 DDX5-029 retained_intron Homo_sapiens 0 532
ENST00000579996 DDX5-007 protein_coding Homo_sapiens 0 712
ENST00000580026 DDX5-031 processed_transcript Homo_sapiens 0 1031
ENST00000581230 DDX5-002 retained_intron Homo_sapiens 0 3410
ENST00000581237 DDX5-032 processed_transcript Homo_sapiens 0 625
ENST00000581551 DDX5-022 retained_intron Homo_sapiens 0 534
ENST00000581693 DDX5-004 nonsense_mediated_decay Homo_sapiens 0 1554
ENST00000581697 DDX5-012 protein_coding Homo_sapiens 0 651
ENST00000581806 DDX5-009 protein_coding Homo_sapiens 0 595
ENST00000582326 DDX5-020 retained_intron Homo_sapiens 0 706
ENST00000583201 DDX5-021 retained_intron Homo_sapiens 0 715
ENST00000583212 DDX5-015 protein_coding Homo_sapiens 0 409
ENST00000583239 DDX5-013 protein_coding Homo_sapiens 0 542
ENST00000583562 DDX5-016 retained_intron Homo_sapiens 0 274
ENST00000583894 DDX5-017 retained_intron Homo_sapiens 0 263
ENST00000584279 DDX5-011 protein_coding Homo_sapiens 0 560
ENST00000584549 DDX5-018 retained_intron Homo_sapiens 0 505
ENST00000585060 DDX5-026 protein_coding Homo_sapiens 0 444
ENST00000585111 DDX5-008 protein_coding Homo_sapiens 0 244
ENST00000585223 DDX5-025 retained_intron Homo_sapiens 0 366
ENST00000585317 DDX5-024 retained_intron Homo_sapiens 0 392

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