C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6625
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177870 Gm6625-201 ENSMUSG00000094790 10090 - 8:89146747-89147247 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000177870
Transcript ID Placenta Testis
ENSMUST00000177870 0.174±0.10 0.117±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_0007ZD CIL_0007ZD_0002 VISTA 8:88702204-89304697
CIL_0007WV CIL_0007WV_0002 VISTA 8:88705819-89307424
CIL_0008AK CIL_0008AK_0002 VISTA 8:88786387-89387574
CIL_0008AN CIL_0008AN_0002 VISTA 8:88940947-89542638
CIL_0007YA CIL_0007YA_0002 VISTA 8:89023884-89625178
CIL_0008AM CIL_0008AM_0002 VISTA 8:89071089-89671832
CIL_0008AP CIL_0008AP_0002 VISTA 8:89086847-89688302

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 385
ENST00000397729 PTMAP8-001 processed_pseudogene Homo_sapiens 0 257
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 375
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 315
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 313
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 0 285
ENST00000411648 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 278
ENST00000442851 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000444251 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000447774 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000455552 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000456700 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000457022 PTMAP1-001 processed_pseudogene Homo_sapiens 3.00018e-42 174
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 279
ENST00000467816 PTMA-010 retained_intron Homo_sapiens 0 206
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 370
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 0 207
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 279

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