C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prothymosin alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188699 Ptma-003 ENSMUSG00000026238 10090 + 1:86526737-86529527 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FJ CIL_0007FJ_0002 CGP 1:86426329-86530712
CIL_0007FM CIL_0007FM_0002 CGP 1:86526726-86582629

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341369 PTMA-002 protein_coding Homo_sapiens 0 209
ENST00000393073 PTMAP5-001 transcribed_processed_pseudogene Homo_sapiens 0 189
ENST00000397627 PTMAP2-001 processed_pseudogene Homo_sapiens 0 200
ENST00000397729 PTMAP8-001 processed_pseudogene Homo_sapiens 7.00649e-45 183
ENST00000409115 PTMA-001 protein_coding Homo_sapiens 0 200
ENST00000409321 PTMA-012 protein_coding Homo_sapiens 0 200
ENST00000409683 PTMA-007 protein_coding Homo_sapiens 0 200
ENST00000410064 PTMA-004 protein_coding Homo_sapiens 0 200
ENST00000411648 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000412128 PTMA-008 protein_coding Homo_sapiens 0 196
ENST00000426188 PTMAP4-001 processed_pseudogene Homo_sapiens 9.80909e-45 183
ENST00000442851 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000444251 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000447474 PTMAP3-001 processed_pseudogene Homo_sapiens 9.99995e-41 171
ENST00000447774 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000448874 PTMA-011 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000455552 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000456700 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000457022 PTMAP1-001 processed_pseudogene Homo_sapiens 2e-35 152
ENST00000466801 PTMA-013 processed_transcript Homo_sapiens 0 202
ENST00000467816 PTMA-010 retained_intron Homo_sapiens 0 200
ENST00000468027 PTMA-006 retained_intron Homo_sapiens 0 200
ENST00000481928 PTMA-003 retained_intron Homo_sapiens 1e-39 169
ENST00000539347 RP11-267J23.4-001 processed_pseudogene Homo_sapiens 9.80909e-45 183
ENST00000602494 RP11-330M2.4-001 processed_pseudogene Homo_sapiens 5.99756e-43 178
ENST00000607242 PTMAP5-002 processed_transcript Homo_sapiens 1e-27 128
ENST00000612829 PTMA-201 protein_coding Homo_sapiens 0 195

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