C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000458237 NPM1P8-001 ENSG00000236285 9606 + X:32205902-32206738 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungMuscleOvaryENST00000458237
Transcript ID Adrenal Brain Breast Colon Liver Lung Muscle Ovary
ENST00000458237 0.111±0.00 0.142±0.00 0.246±0.00 0.292±0.00 0.036±0.00 0.039±0.00 0.061±0.00 0.067±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 933
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 883
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 854
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 771
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 769
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000120677 Gm12583-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 536
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 285
ENSMUST00000117205 Gm13423-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 7e-39 165
ENSMUST00000120811 Gm16057-001 processed_pseudogene Mus_musculus 4e-16 90

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