C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3 pseudogene 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000463217 RPL3P9-001 ENSG00000240540 9606 - 8:79571153-79572335 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000463217
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000463217 0.299±0.00 0.192±0.00 0.109±0.00 0.233±0.00 0.312±0.00 0.075±0.00 0.027±0.00 0.194±0.00 0.089±0.00 0.067±0.00 0.104±0.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1236
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1236
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1234
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1232
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1170
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 902
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 806
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 734
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 665
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 0 505
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 331

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