C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465158 RBM39-031 ENSG00000131051 9606 - 20:35704405-35713366 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 843
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 843
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 760
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 760
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 760
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 704
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 339
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 230

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