Transcript ID | Bladder | Brain | Liver | Muscle | Placenta |
---|---|---|---|---|---|
ENSMUST00000109587 | 14.776±1.96 | 18.016±1.07 | 16.213±2.60 | 6.734±2.49 | 20.259±1.27 |
Transcript Info |
||||||
Description: | RNA binding motif protein 39 | |||||
---|---|---|---|---|---|---|
Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000109587 | Rbm39-001 | ENSMUSG00000027620 | 10090 | - | 2:156147239-156180238 | protein_coding |
Expression Patterns
|
Conserved Regions | |||
---|---|---|---|
Region ID | Sub-Region | Region Type | Position |
CIL_0008EI | CIL_0008EI_0002 | VISTA | 2:155562263-156164147 |
CIL_0000WY | CIL_0000WY_0002 | CGP | 2:156144039-156180238 |
CIL_0000X2 | CIL_0000X2_0002 | CGP | 2:156147239-156309952 |
Gene Ontology | ||
---|---|---|
GO ID | Evidence Type | GO Description |
GO:0000166 | IEA | nucleotide binding |
GO:0003713 | TAS | transcription coactivator activity |
GO:0005515 | IPI | protein binding |
GO:0005634 | TAS | nucleus |
GO:0005815 | IEA | microtubule organizing center |
GO:0006351 | TAS | transcription, DNA-templated |
GO:0006355 | IEA | regulation of transcription, DNA-templated |
GO:0006397 | IEA | mRNA processing |
GO:0008380 | IEA | RNA splicing |
GO:0015630 | IEA | microtubule cytoskeleton |
GO:0044822 | IEA | poly(A) RNA binding |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENST00000253363 | RBM39-002 | protein_coding | Homo_sapiens | 0 | 3265 |
ENST00000338163 | RBM39-008 | nonsense_mediated_decay | Homo_sapiens | 0 | 1916 |
ENST00000361162 | RBM39-001 | protein_coding | Homo_sapiens | 0 | 3461 |
ENST00000374038 | RBM39-020 | protein_coding | Homo_sapiens | 0 | 1242 |
ENST00000397254 | RP6-218J18.2-001 | processed_pseudogene | Homo_sapiens | 0 | 2093 |
ENST00000397370 | RBM39-013 | protein_coding | Homo_sapiens | 0 | 422 |
ENST00000403542 | RBM39-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 3166 |
ENST00000412738 | RBM39-017 | nonsense_mediated_decay | Homo_sapiens | 0 | 800 |
ENST00000416108 | RBM39-043 | nonsense_mediated_decay | Homo_sapiens | 0 | 412 |
ENST00000416529 | RBM39-024 | nonsense_mediated_decay | Homo_sapiens | 1e-24 | 117 |
ENST00000425184 | RBM39-021 | nonsense_mediated_decay | Homo_sapiens | 0 | 601 |
ENST00000426951 | RBM39-039 | protein_coding | Homo_sapiens | 0 | 331 |
ENST00000429968 | RBM39-005 | nonsense_mediated_decay | Homo_sapiens | 0 | 2401 |
ENST00000433027 | RBM39-045 | nonsense_mediated_decay | Homo_sapiens | 0 | 399 |
ENST00000434927 | RBM39-018 | protein_coding | Homo_sapiens | 0 | 833 |
ENST00000442447 | RBM39-016 | processed_transcript | Homo_sapiens | 0 | 335 |
ENST00000444878 | RBM39-007 | nonsense_mediated_decay | Homo_sapiens | 0 | 2372 |
ENST00000448303 | RBM39-035 | protein_coding | Homo_sapiens | 0 | 837 |
ENST00000449489 | RBM39-044 | nonsense_mediated_decay | Homo_sapiens | 3e-19 | 99 |
ENST00000453310 | RBM39-012 | nonsense_mediated_decay | Homo_sapiens | 0 | 361 |
ENST00000455343 | RBM39-019 | nonsense_mediated_decay | Homo_sapiens | 0 | 315 |
ENST00000461283 | RBM39-009 | retained_intron | Homo_sapiens | 0 | 3049 |
ENST00000461849 | RBM39-014 | retained_intron | Homo_sapiens | 0 | 340 |
ENST00000463004 | RBM39-004 | retained_intron | Homo_sapiens | 0 | 3168 |
ENST00000463098 | RBM39-003 | processed_transcript | Homo_sapiens | 0 | 333 |
ENST00000465158 | RBM39-031 | retained_intron | Homo_sapiens | 0 | 760 |
ENST00000470563 | RBM39-027 | processed_transcript | Homo_sapiens | 0 | 281 |
ENST00000471635 | RBM39-030 | retained_intron | Homo_sapiens | 3.00004e-41 | 172 |
ENST00000475651 | RBM39-028 | retained_intron | Homo_sapiens | 0 | 481 |
ENST00000476806 | RBM39-029 | nonsense_mediated_decay | Homo_sapiens | 0 | 894 |
ENST00000477334 | RBM39-026 | retained_intron | Homo_sapiens | 0 | 313 |
ENST00000481037 | RBM39-022 | retained_intron | Homo_sapiens | 0 | 444 |
ENST00000482563 | RBM39-011 | retained_intron | Homo_sapiens | 0 | 466 |
ENST00000490354 | RBM39-034 | retained_intron | Homo_sapiens | 0 | 597 |
ENST00000490484 | RBM39-036 | retained_intron | Homo_sapiens | 0 | 935 |
ENST00000492779 | RBM39-010 | retained_intron | Homo_sapiens | 0 | 2398 |
ENST00000493853 | RBM39-042 | retained_intron | Homo_sapiens | 3e-21 | 106 |
ENST00000494274 | RBM39-040 | processed_transcript | Homo_sapiens | 0 | 883 |
ENST00000495293 | RBM39-032 | retained_intron | Homo_sapiens | 0 | 987 |
ENST00000496183 | RBM39-033 | retained_intron | Homo_sapiens | 0 | 747 |
ENST00000528062 | RBM39-015 | protein_coding | Homo_sapiens | 0 | 2353 |
ENST00000615771 | RBM39-047 | processed_transcript | Homo_sapiens | 0 | 647 |