C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148794 Rbm39-019 ENSMUSG00000027620 10090 - 2:156149236-156164923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000148794
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000148794 100.548±0.00 224.392±0.00 175.949±25.44 48.780±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 765
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 649
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 398
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 689
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 765
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 765
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000448303 RBM39-035 protein_coding Homo_sapiens 0 1352
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 649
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 765
ENST00000465158 RBM39-031 retained_intron Homo_sapiens 0 339
ENST00000470563 RBM39-027 processed_transcript Homo_sapiens 0 281
ENST00000471635 RBM39-030 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000475651 RBM39-028 retained_intron Homo_sapiens 0 409
ENST00000476806 RBM39-029 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000482563 RBM39-011 retained_intron Homo_sapiens 0 285
ENST00000490354 RBM39-034 retained_intron Homo_sapiens 3e-40 169
ENST00000490484 RBM39-036 retained_intron Homo_sapiens 0 531
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 765
ENST00000494274 RBM39-040 processed_transcript Homo_sapiens 0 479
ENST00000495293 RBM39-032 retained_intron Homo_sapiens 0 455
ENST00000496183 RBM39-033 retained_intron Homo_sapiens 0 285
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 765
ENST00000615771 RBM39-047 processed_transcript Homo_sapiens 0 407

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