C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029149 Rbm39-018 ENSMUSG00000027620 10090 - 2:156147249-156180167 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000029149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000029149 9.861±1.77 12.612±2.38 20.001±5.44 28.717±3.07 10.699±2.11 7.874±1.94 7.656±1.93 11.094±3.35 20.554±14.12 16.513±1.65 11.912±1.91 7.304±1.72 36.534±8.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 3147
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 1960
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 3467
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 1221
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 1988
ENST00000397370 RBM39-013 protein_coding Homo_sapiens 0 422
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 3049
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 800
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000416529 RBM39-024 nonsense_mediated_decay Homo_sapiens 1e-24 117
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000426951 RBM39-039 protein_coding Homo_sapiens 0 331
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 2285
ENST00000433027 RBM39-045 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000434927 RBM39-018 protein_coding Homo_sapiens 0 833
ENST00000442447 RBM39-016 processed_transcript Homo_sapiens 0 335
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 2455
ENST00000448303 RBM39-035 protein_coding Homo_sapiens 0 721
ENST00000449489 RBM39-044 nonsense_mediated_decay Homo_sapiens 3e-19 99
ENST00000453310 RBM39-012 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000455343 RBM39-019 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 3131
ENST00000461849 RBM39-014 retained_intron Homo_sapiens 0 340
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 3048
ENST00000463098 RBM39-003 processed_transcript Homo_sapiens 0 333
ENST00000465158 RBM39-031 retained_intron Homo_sapiens 0 843
ENST00000470563 RBM39-027 processed_transcript Homo_sapiens 0 364
ENST00000475651 RBM39-028 retained_intron Homo_sapiens 0 523
ENST00000476806 RBM39-029 nonsense_mediated_decay Homo_sapiens 0 861
ENST00000477334 RBM39-026 retained_intron Homo_sapiens 0 313
ENST00000481037 RBM39-022 retained_intron Homo_sapiens 0 444
ENST00000482563 RBM39-011 retained_intron Homo_sapiens 0 466
ENST00000490354 RBM39-034 retained_intron Homo_sapiens 0 597
ENST00000490484 RBM39-036 retained_intron Homo_sapiens 0 935
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 2281
ENST00000493853 RBM39-042 retained_intron Homo_sapiens 3e-21 106
ENST00000494274 RBM39-040 processed_transcript Homo_sapiens 0 883
ENST00000495293 RBM39-032 retained_intron Homo_sapiens 0 870
ENST00000496183 RBM39-033 retained_intron Homo_sapiens 0 747
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 2237
ENST00000615771 RBM39-047 processed_transcript Homo_sapiens 0 647

Loading