C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000155837 Rbm39-002 ENSMUSG00000027620 10090 - 2:156147940-156180176 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000155837
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000155837 8.161±1.12 9.484±1.54 7.203±0.89 5.874±0.00 4.631±1.34 8.014±1.33 5.144±1.48 11.100±0.41 5.137±0.07 8.606±3.18 35.498±8.23 11.321±7.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0006351 TAS transcription, DNA-templated
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 2488
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 1600
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 2372
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 887
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 2023
ENST00000397370 RBM39-013 protein_coding Homo_sapiens 0 340
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 2966
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 800
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 0 640
ENST00000416529 RBM39-024 nonsense_mediated_decay Homo_sapiens 5e-24 115
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 730
ENST00000426951 RBM39-039 protein_coding Homo_sapiens 0 315
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 2401
ENST00000433027 RBM39-045 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000434927 RBM39-018 protein_coding Homo_sapiens 0 741
ENST00000442447 RBM39-016 processed_transcript Homo_sapiens 0 254
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 2850
ENST00000448303 RBM39-035 protein_coding Homo_sapiens 0 837
ENST00000449489 RBM39-044 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000453310 RBM39-012 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000455343 RBM39-019 nonsense_mediated_decay Homo_sapiens 0 547
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 2370
ENST00000461849 RBM39-014 retained_intron Homo_sapiens 0 477
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 2486
ENST00000463098 RBM39-003 processed_transcript Homo_sapiens 0 470
ENST00000465158 RBM39-031 retained_intron Homo_sapiens 0 760
ENST00000470563 RBM39-027 processed_transcript Homo_sapiens 0 281
ENST00000471635 RBM39-030 retained_intron Homo_sapiens 3.00004e-41 172
ENST00000475651 RBM39-028 retained_intron Homo_sapiens 0 481
ENST00000476806 RBM39-029 nonsense_mediated_decay Homo_sapiens 0 894
ENST00000477334 RBM39-026 retained_intron Homo_sapiens 0 313
ENST00000481037 RBM39-022 retained_intron Homo_sapiens 0 444
ENST00000482563 RBM39-011 retained_intron Homo_sapiens 0 466
ENST00000490354 RBM39-034 retained_intron Homo_sapiens 0 597
ENST00000490484 RBM39-036 retained_intron Homo_sapiens 0 935
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 2398
ENST00000493853 RBM39-042 retained_intron Homo_sapiens 7e-32 141
ENST00000494274 RBM39-040 processed_transcript Homo_sapiens 0 883
ENST00000495293 RBM39-032 retained_intron Homo_sapiens 0 987
ENST00000496183 RBM39-033 retained_intron Homo_sapiens 0 747
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 2058
ENST00000615771 RBM39-047 processed_transcript Homo_sapiens 0 647

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