C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15575
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119414 Gm15575-001 ENSMUSG00000083183 10090 - 16:38748729-38750309 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119414 0.099±0.00 0.183±0.10 0.095±0.03 0.028±0.00 0.105±0.06 0.217±0.12 0.174±0.13 0.034±0.00 0.011±0.01 0.562±0.00 0.013±0.00 0.293±0.19 0.090±0.03 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003M8 CIL_0003M8_0002 CGP 16:38598340-38769049

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 0 1251
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 802
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 1162
ENST00000397254 RP6-218J18.2-001 processed_pseudogene Homo_sapiens 0 1109
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 1251
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 263
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 1251
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 1162
ENST00000448303 RBM39-035 protein_coding Homo_sapiens 0 595
ENST00000449489 RBM39-044 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000453310 RBM39-012 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000455343 RBM39-019 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000461283 RBM39-009 retained_intron Homo_sapiens 0 1162
ENST00000461849 RBM39-014 retained_intron Homo_sapiens 7.00649e-44 182
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 1251
ENST00000463098 RBM39-003 processed_transcript Homo_sapiens 7.00649e-44 182
ENST00000465158 RBM39-031 retained_intron Homo_sapiens 0 448
ENST00000475651 RBM39-028 retained_intron Homo_sapiens 0 318
ENST00000476806 RBM39-029 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000482563 RBM39-011 retained_intron Homo_sapiens 0 224
ENST00000490354 RBM39-034 retained_intron Homo_sapiens 0 350
ENST00000490484 RBM39-036 retained_intron Homo_sapiens 0 619
ENST00000492779 RBM39-010 retained_intron Homo_sapiens 0 1251
ENST00000493853 RBM39-042 retained_intron Homo_sapiens 7e-27 124
ENST00000494274 RBM39-040 processed_transcript Homo_sapiens 0 584
ENST00000495293 RBM39-032 retained_intron Homo_sapiens 0 536
ENST00000496183 RBM39-033 retained_intron Homo_sapiens 0 416
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 1411
ENST00000615771 RBM39-047 processed_transcript Homo_sapiens 0 416

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