C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000470544 RPL7AP31-001 ENSG00000242083 9606 + 4:56356135-56356932 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonLiverLungOvaryTestisENST00000470544
Transcript ID Adrenal Bladder Breast Colon Liver Lung Ovary Testis
ENST00000470544 0.276±0.00 0.340±0.00 0.431±0.00 0.111±0.00 0.056±0.00 0.293±0.00 0.067±0.00 0.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Q CIL_00084Q_0001 VISTA 4:55753423-56357627
CIL_0005R2 CIL_0005R2_0001 CGP 4:56170195-56387508
CIL_00025Q CIL_00025Q_0001 CGP 4:56338287-56435615

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 784
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 752
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 701
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 688
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 608
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000129972 Gm16304-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000177515 Gm20660-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000184119 Gm27189-001 processed_pseudogene Mus_musculus 3e-17 94

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