C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L3 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000474162 RPL3P6-001 ENSG00000213891 9606 - 5:61390668-61391871 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverLungMusclePlacentaTestisENST00000474162
Transcript ID Adrenal Brain Breast Liver Lung Muscle Placenta Testis
ENST00000474162 0.325±0.00 0.111±0.00 0.502±0.00 0.587±0.00 0.576±0.00 0.088±0.00 0.024±0.00 0.226±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089501 Gm5879-201 processed_pseudogene Mus_musculus 0 1125
ENSMUST00000081650 Rpl3-001 protein_coding Mus_musculus 0 1120
ENSMUST00000120557 Rpl3-ps1-001 processed_pseudogene Mus_musculus 0 1112
ENSMUST00000117131 Rpl3-ps2-001 processed_pseudogene Mus_musculus 0 1110
ENSMUST00000118069 Gm12816-001 processed_pseudogene Mus_musculus 0 1070
ENSMUST00000187578 Rpl3-002 retained_intron Mus_musculus 0 752
ENSMUST00000121389 Gm11662-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000188025 Rpl3-007 retained_intron Mus_musculus 0 693
ENSDART00000011251 rpl3-001 protein_coding Danio_rerio 0 595
ENSMUST00000185306 Rpl3-003 protein_coding Mus_musculus 0 529
ENSMUST00000187832 Rpl3-006 nonsense_mediated_decay Mus_musculus 0 300
ENSDART00000147048 rpl3-002 processed_transcript Danio_rerio 2.99878e-43 180

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