C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17 pseudogene 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475372 RPL17P44-001 ENSG00000241088 9606 + 18:62415678-62416227 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungOvaryTestisENST00000475372
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Ovary Testis
ENST00000475372 0.022±0.00 0.046±0.00 0.091±0.00 0.045±0.00 0.045±0.00 0.042±0.00 0.064±0.00 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076G CIL_00076G_0001 CGP 18:62325287-62587709

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 544
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 342
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 444

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