C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L17, pseudogene 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119383 Rpl17-ps10-001 ENSMUSG00000081895 10090 - 7:72648757-72649311 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119383
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119383 0.743±0.19 0.437±0.29 2.913±2.69 4.590±0.36 0.781±0.37 1.633±1.35 0.876±0.40 1.321±0.89 9.392±7.52 0.532±0.39 0.320±0.13 1.347±0.78 0.175±0.12 0.806±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UC CIL_0008UC_0002 VISTA 7:72240417-72843228

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332968 RPL17-C18orf32-003 protein_coding Homo_sapiens 0 532
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 556
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 555
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 577
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 344
ENST00000404780 RP3-403A15.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 603
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 693
ENST00000416091 AC007272.3-001 processed_pseudogene Homo_sapiens 0 418
ENST00000417063 AC020983.5-001 processed_pseudogene Homo_sapiens 0 568
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 366
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 704
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 479
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 420
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 279
ENST00000443728 RPL17P49-001 processed_pseudogene Homo_sapiens 4.99983e-42 174
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 363
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 606
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 638
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 592
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 649
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 457
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 544
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 606
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 536
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 704
ENST00000475372 RPL17P44-001 processed_pseudogene Homo_sapiens 0 540
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 529
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 472
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 403
ENST00000491913 RPL17P2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 682
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 0 189
ENST00000524791 RP11-757C15.4-001 processed_pseudogene Homo_sapiens 0 307
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000578532 RPL17-017 protein_coding Homo_sapiens 0 649
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 704
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 704
ENST00000579820 C18orf32-201 protein_coding Homo_sapiens 0 532
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 660
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 704
ENST00000580387 RPL17-019 protein_coding Homo_sapiens 0 486
ENST00000581091 RPL17-012 processed_transcript Homo_sapiens 0 534
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 599
ENST00000581741 RPL17-009 retained_intron Homo_sapiens 0 374
ENST00000582935 RPL17-013 retained_intron Homo_sapiens 0 294
ENST00000583036 RPL17-008 protein_coding Homo_sapiens 0 521
ENST00000583637 RPL17-016 protein_coding Homo_sapiens 0 665
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 603
ENST00000584895 RPL17-C18orf32-001 protein_coding Homo_sapiens 0 638
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 468
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 8e-38 159
ENST00000615479 RPL17-025 protein_coding Homo_sapiens 0 364
ENST00000615760 RPL17-024 protein_coding Homo_sapiens 0 497
ENST00000617346 RPL17-022 protein_coding Homo_sapiens 0 638
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 704
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 704

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