C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11343
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120579 Gm11343-001 ENSMUSG00000081707 10090 + 13:24195897-24196495 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungENSMUST00000120579
Transcript ID Adrenal Brain Colon Liver Lung
ENSMUST00000120579 0.539±0.00 0.062±0.04 0.208±0.02 0.106±0.04 0.269±0.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 486
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 464
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 492
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 265
ENST00000404780 RP3-403A15.1-001 processed_pseudogene Homo_sapiens 0 322
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 521
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 586
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 320
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 621
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 405
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 547
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 348
ENST00000429934 RP11-383F6.1-001 processed_pseudogene Homo_sapiens 0 318
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 235
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 311
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 516
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 536
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 516
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 544
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 494
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 540
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 466
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 603
ENST00000475372 RPL17P44-001 processed_pseudogene Homo_sapiens 0 451
ENST00000483964 RP11-7F18.1-001 processed_pseudogene Homo_sapiens 0 429
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 0 267
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 383
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 357
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 553
ENST00000511559 RP11-115A14.1-001 processed_pseudogene Homo_sapiens 0 191
ENST00000560214 RP11-14C10.2-001 processed_pseudogene Homo_sapiens 0 217
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 623
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 621
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 564
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 636
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 505
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 512
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 388
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 2e-23 111
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 617
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 619

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