C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00076G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000141655-ENSG00000141664 CGP 9606 18:62325287-62587709
GeneTranscriptPositionBiotype
ENSG00000141655 (TNFRSF11A)
tumor necrosis factor receptor superfamily, member 11a, NFKB activator 		ENST00000269485 (TNFRSF11A-002) 62325287-62387659 protein_coding
ENST00000586569 (TNFRSF11A-001) 62325315-62391292 protein_coding
ENST00000587697 (TNFRSF11A-004) 62357903-62360043 retained_intron
ENST00000592013 (TNFRSF11A-003) 62325326-62336786 retained_intron
ENST00000616710 (TNFRSF11A-201) 62325287-62387710 protein_coding
ENST00000617039 (TNFRSF11A-202) 62325287-62387710 protein_coding
ENSG00000141664 (ZCCHC2)
zinc finger, CCHC domain containing 2 		ENST00000269499 (ZCCHC2-005) 62523007-62578583 protein_coding
ENST00000585873 (ZCCHC2-001) 62523667-62586729 nonsense_mediated_decay
ENST00000585949 (ZCCHC2-007) 62560353-62576729 retained_intron
ENST00000586834 (ZCCHC2-004) 62539514-62578579 protein_coding
ENST00000587612 (ZCCHC2-009) 62574479-62575499 processed_transcript
ENST00000588676 (ZCCHC2-006) 62523619-62525495 protein_coding
ENST00000590840 (ZCCHC2-011) 62581805-62586729 processed_transcript
ENST00000591145 (ZCCHC2-010) 62575298-62587709 nonsense_mediated_decay
ENST00000591435 (ZCCHC2-008) 62558542-62564602 retained_intron
ENST00000591632 (ZCCHC2-002) 62524173-62563065 processed_transcript
ENST00000621048 (ZCCHC2-012) 62526889-62560644 protein_coding
ENSG00000199867 (Y_RNA)
Y RNA 		ENST00000362997 (Y_RNA.1-281) 62330812-62330913 misc_RNA
ENSG00000241088 (RPL17P44)
ribosomal protein L17 pseudogene 44 		ENST00000475372 (RPL17P44-001) 62415678-62416227 processed_pseudogene
ENSG00000266920 (ACTBP9)
actin, beta pseudogene 9 		ENST00000587663 (ACTBP9-001) 62442028-62443126 processed_pseudogene
ENSG00000267341 (RP11-640A1.3)
 ENST00000589084 (RP11-640A1.3-001) 62372894-62378130 antisense
ENSG00000278017 (RP11-120K19.4)
 ENST00000612025 (RP11-120K19.4-001) 62525919-62526325 antisense
ENSG00000279236 (RP11-120K19.3)
 ENST00000625052 (RP11-120K19.3-001) 62551203-62552505 TEC
CIL_00076G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026321-ENSMUSG00000038866 CGP 10090 1:105780718-106034074
GeneTranscriptPositionBiotype
ENSMUSG00000026321 (Tnfrsf11a)
tumor necrosis factor receptor superfamily, member 11a, NFKB activator 		ENSMUST00000027559 (Tnfrsf11a-001) 105780718-105847981 protein_coding
ENSMUST00000187658 (Tnfrsf11a-003) 105819870-105825401 retained_intron
ENSMUST00000187812 (Tnfrsf11a-002) 105780750-105814403 retained_intron
ENSMUSG00000038866 (Zcchc2)
zinc finger, CCHC domain containing 2 		ENSMUST00000118196 (Zcchc2-001) 105990406-106034074 protein_coding
ENSMUST00000119166 (Zcchc2-002) 105990689-106034067 protein_coding
ENSMUST00000131830 (Zcchc2-003) 106011744-106023258 nonsense_mediated_decay
ENSMUST00000186983 (Zcchc2-004) 106004122-106032448 protein_coding
ENSMUST00000188954 (Zcchc2-005) 106004137-106027501 protein_coding
ENSMUSG00000099448 (RP24-79F8.2)
predicted gene, 18801 		ENSMUST00000186616 (RP24-79F8.2-001) 105955775-105956310 processed_pseudogene
ENSMUSG00000099843 (RP24-79F8.3)
predicted gene 7160 		ENSMUST00000185535 (RP24-79F8.3-001) 105979350-105990282 lincRNA
ENSMUST00000188519 (RP24-79F8.3-002) 105989226-105990252 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076G_0001ENSG00000141655ENST00000269485ENST00000586569ENST00000587697ENST00000592013ENST00000616710ENST00000617039ENSG00000141664ENST00000269499ENST00000585873ENST00000585949ENST00000586834ENST00000587612ENST00000588676ENST00000590840ENST00000591145ENST00000591435ENST00000591632ENST00000621048ENSG00000199867ENST00000362997ENSG00000241088ENST00000475372ENSG00000266920ENST00000587663ENSG00000267341ENST00000589084ENSG00000278017ENST00000612025ENSG00000279236ENST00000625052CIL_00076G_0002ENSMUSG00000026321ENSMUST00000027559ENSMUST00000187658ENSMUST00000187812ENSMUSG00000038866ENSMUST00000118196ENSMUST00000119166ENSMUST00000131830ENSMUST00000186983ENSMUST00000188954ENSMUSG00000099448ENSMUST00000186616ENSMUSG00000099843ENSMUST00000185535ENSMUST00000188519
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076G_0001ENSG00000141655ENST00000269485ENST00000586569ENST00000587697ENST00000592013ENST00000616710ENST00000617039ENSG00000141664ENST00000269499ENST00000585873ENST00000585949ENST00000586834ENST00000590840ENST00000591435ENST00000621048ENSG00000199867ENST00000362997ENSG00000241088ENST00000475372ENSG00000266920ENST00000587663ENSG00000267341ENST00000589084ENSG00000278017ENST00000612025ENSG00000279236ENST00000625052CIL_00076G_0002ENSMUSG00000026321ENSMUST00000027559ENSMUST00000187812ENSMUSG00000038866ENSMUST00000118196ENSMUST00000119166ENSMUST00000186983ENSMUST00000188954ENSMUSG00000099448ENSMUST00000186616ENSMUSG00000099843ENSMUST00000185535ENSMUST00000188519
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141655 ENST00000269485 N/A 0.999±0.00 N/A N/A 1.009±0.20 1.297±0.00 N/A 0.536±0.00 0.348±0.29 N/A N/A 0.868±0.76 0.979±0.13 0.439±0.00
ENST00000586569 0.091±0.00 1.094±0.00 N/A N/A 0.355±0.00 0.712±0.51 0.085±0.00 0.180±0.00 0.070±0.05 0.094±0.05 0.028±0.00 0.194±0.13 0.624±0.20 0.254±0.07
ENST00000587697 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.222±0.00 N/A N/A N/A N/A
ENST00000592013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.271±0.00 N/A N/A N/A
ENST00000616710 0.249±0.00 1.019±0.00 N/A 0.344±0.08 N/A 4.051±0.00 0.271±0.00 N/A N/A 0.183±0.00 N/A 1.141±0.00 1.100±0.38 0.691±0.00
ENST00000617039 N/A N/A N/A N/A 0.391±0.00 0.397±0.00 N/A 0.142±0.00 0.046±0.00 0.088±0.00 N/A 0.111±0.00 N/A N/A
ENSG00000141664 ENST00000269499 3.467±0.00 1.683±0.00 N/A 2.456±1.40 2.715±0.00 1.791±1.05 1.063±0.00 1.494±0.94 1.031±0.27 4.011±0.00 1.958±0.00 1.199±1.01 1.186±0.70 9.964±0.00
ENST00000585873 N/A N/A 0.227±0.00 N/A 0.858±0.00 N/A 0.356±0.00 0.855±0.00 0.441±0.00 0.550±0.00 4.940±0.00 0.839±0.00 N/A 3.582±0.00
ENST00000585949 N/A N/A 0.724±0.00 1.442±0.00 2.248±0.00 N/A N/A N/A 2.094±0.00 1.377±0.00 1.273±0.00 0.618±0.00 N/A N/A
ENST00000586834 N/A N/A 0.498±0.00 N/A 1.344±0.00 N/A 0.684±0.00 0.556±0.00 0.793±0.15 2.533±0.00 0.361±0.00 1.345±0.00 N/A 5.928±0.00
ENST00000587612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590840 N/A N/A N/A N/A N/A 1.089±0.00 N/A 1.423±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.640±0.00 N/A N/A N/A
ENST00000591632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.973±0.00 N/A N/A N/A
ENSG00000199867 ENST00000362997 N/A 0.369±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241088 ENST00000475372 0.022±0.00 0.046±0.00 N/A 0.091±0.00 0.045±0.00 N/A N/A 0.045±0.00 N/A 0.042±0.00 N/A 0.064±0.00 N/A 0.081±0.00
ENSG00000266920 ENST00000587663 0.250±0.00 0.126±0.00 N/A 0.147±0.00 0.047±0.00 0.126±0.00 N/A 0.044±0.00 0.244±0.00 0.084±0.00 0.053±0.00 0.024±0.00 N/A 0.214±0.00
ENSG00000267341 ENST00000589084 N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
ENSG00000278017 ENST00000612025 N/A 0.807±0.00 0.883±0.00 0.189±0.00 0.226±0.01 0.028±0.00 N/A N/A 0.052±0.00 0.494±0.00 N/A N/A 0.406±0.00 0.715±0.48
ENSG00000279236 ENST00000625052 0.219±0.00 0.214±0.00 0.654±0.00 0.226±0.04 0.386±0.35 0.612±0.55 0.207±0.10 0.840±0.64 0.331±0.28 0.557±0.51 0.028±0.00 0.274±0.29 0.114±0.00 0.144±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026321 ENSMUST00000027559 1.748±0.48 1.546±0.56 5.335±1.83 0.288±0.10 2.653±0.99 27.818±7.64 0.481±0.08 1.175±0.21 0.264±0.11 2.029±0.17 0.094±0.05 1.946±0.91 0.285±0.25 0.125±0.05
ENSMUST00000187658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187812 1.671±0.00 1.623±0.15 N/A N/A 3.250±0.00 30.512±8.36 0.508±0.00 0.738±0.00 0.151±0.00 N/A N/A 1.156±0.00 0.230±0.00 0.083±0.00
ENSMUSG00000038866 ENSMUST00000118196 2.980±0.93 2.392±0.62 N/A 3.886±0.62 4.145±1.90 2.084±0.42 0.371±0.00 2.097±0.76 2.540±0.77 1.558±0.26 0.731±0.33 3.367±1.21 3.502±2.28 11.118±4.05
ENSMUST00000119166 3.722±0.35 2.513±0.65 2.329±0.03 1.253±0.48 2.858±1.04 1.454±0.40 0.599±0.18 1.273±0.47 1.968±0.62 2.362±0.74 0.948±0.29 2.178±0.92 1.741±0.26 7.088±2.81
ENSMUST00000131830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186983 1.620±0.00 8.196±1.87 N/A 2.264±0.00 9.595±1.20 4.970±0.90 0.736±0.14 2.781±1.43 4.494±0.87 N/A 0.636±0.10 6.992±1.64 N/A 11.368±1.60
ENSMUST00000188954 N/A N/A N/A 8.845±0.00 N/A N/A N/A N/A N/A N/A N/A 8.621±0.00 12.281±5.47 34.336±0.00
ENSMUSG00000099448 ENSMUST00000186616 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A 0.060±0.00 N/A 0.016±0.01 N/A
ENSMUSG00000099843 ENSMUST00000185535 N/A N/A 0.309±0.00 N/A 0.229±0.09 0.519±0.00 0.371±0.20 0.217±0.11 0.445±0.21 N/A 0.450±0.01 1.015±0.24 0.563±0.36 0.451±0.47
ENSMUST00000188519 0.862±0.30 N/A 0.642±0.12 0.509±0.51 0.699±0.54 0.754±0.24 0.412±0.17 0.443±0.15 0.708±0.29 1.187±0.32 1.244±0.54 0.733±0.46 0.910±0.49 0.336±0.16

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