C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 4986
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119731 Gm4986-001 ENSMUSG00000080996 10090 - X:40137008-40137556 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENSMUST00000119731
Transcript ID Bladder Ovary Placenta Testis
ENSMUST00000119731 0.080±0.00 0.090±0.00 0.166±0.00 0.114±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 466
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 477
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 483
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 222
ENST00000404780 RP3-403A15.1-001 processed_pseudogene Homo_sapiens 0 335
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 508
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 604
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 316
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 616
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 407
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 573
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 364
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 514
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 296
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 555
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 520
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 566
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 466
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 525
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 503
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 621
ENST00000475372 RPL17P44-001 processed_pseudogene Homo_sapiens 0 444
ENST00000485656 RP11-273P3.1-001 processed_pseudogene Homo_sapiens 0 248
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 394
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 364
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 599
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 553
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 0 195
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 616
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 616
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 571
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 616
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 505
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 508
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 396
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 2e-38 161
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 616
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 616

Loading