C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11531
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117614 Gm11531-001 ENSMUSG00000075587 10090 + 11:96392112-96392666 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverOvaryPlacentaTestisENSMUST00000117614
Transcript ID Adipose Bladder Brain Breast Liver Ovary Placenta Testis
ENSMUST00000117614 0.140±0.00 0.020±0.00 0.022±0.00 0.337±0.00 0.019±0.01 0.174±0.08 0.216±0.21 0.097±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391360 RP11-347C18.1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000394133 RP11-624L12.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000396131 RPL17P50-001 processed_pseudogene Homo_sapiens 0 538
ENST00000400791 RPL17P40-001 processed_pseudogene Homo_sapiens 0 303
ENST00000404330 RPL17P25-001 processed_pseudogene Homo_sapiens 0 560
ENST00000404382 RP3-472M2.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000404780 RP3-403A15.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000407033 RPL17P26-001 processed_pseudogene Homo_sapiens 0 592
ENST00000414070 RP11-20O24.4-001 processed_pseudogene Homo_sapiens 0 676
ENST00000417593 RPL17P11-001 processed_pseudogene Homo_sapiens 0 372
ENST00000418495 RPL17-201 protein_coding Homo_sapiens 0 688
ENST00000419491 RPL17P17-001 processed_pseudogene Homo_sapiens 0 455
ENST00000420302 RP11-215A21.2-001 processed_pseudogene Homo_sapiens 0 645
ENST00000422360 RPL17P43-001 processed_pseudogene Homo_sapiens 0 435
ENST00000429025 CTA-440B3.1-001 processed_pseudogene Homo_sapiens 0 401
ENST00000442115 RP11-11M20.2-001 processed_pseudogene Homo_sapiens 0 274
ENST00000444020 RP11-1029M24.1-001 processed_pseudogene Homo_sapiens 0 586
ENST00000445757 AC007677.2-001 processed_pseudogene Homo_sapiens 0 357
ENST00000446498 RP3-476K8.4-001 processed_pseudogene Homo_sapiens 0 606
ENST00000447415 RP4-612B15.2-001 processed_pseudogene Homo_sapiens 0 621
ENST00000448403 RP11-383G10.3-001 processed_pseudogene Homo_sapiens 0 569
ENST00000452862 AC144530.1-001 processed_pseudogene Homo_sapiens 0 632
ENST00000456309 RP11-317B3.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000461464 RPL17P20-001 processed_pseudogene Homo_sapiens 0 542
ENST00000467688 RPL17P22-001 processed_pseudogene Homo_sapiens 0 606
ENST00000469329 RPL17P41-001 processed_pseudogene Homo_sapiens 0 536
ENST00000471722 RP4-706A16.3-001 processed_pseudogene Homo_sapiens 0 688
ENST00000475372 RPL17P44-001 processed_pseudogene Homo_sapiens 0 532
ENST00000488371 RP11-864J10.2-001 processed_pseudogene Homo_sapiens 0 438
ENST00000488887 AF131215.1-001 processed_pseudogene Homo_sapiens 0 381
ENST00000490729 RPL17P37-001 processed_pseudogene Homo_sapiens 0 425
ENST00000498103 RP11-592N21.1-001 processed_pseudogene Homo_sapiens 0 665
ENST00000498256 RPL17P33-001 processed_pseudogene Homo_sapiens 0 630
ENST00000504072 CTD-2218G20.1-001 processed_pseudogene Homo_sapiens 0 191
ENST00000577910 RPL17-C18orf32-002 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000579248 RPL17-018 protein_coding Homo_sapiens 0 688
ENST00000579408 RPL17-003 protein_coding Homo_sapiens 0 688
ENST00000580210 RPL17-015 protein_coding Homo_sapiens 0 643
ENST00000580261 RPL17-001 protein_coding Homo_sapiens 0 688
ENST00000581373 RPL17-002 protein_coding Homo_sapiens 0 588
ENST00000584364 RPL17-014 retained_intron Homo_sapiens 0 592
ENST00000596405 CTD-2550O8.7-001 processed_pseudogene Homo_sapiens 0 462
ENST00000605218 RPL17P51-001 processed_pseudogene Homo_sapiens 1e-36 156
ENST00000618613 RPL17-202 protein_coding Homo_sapiens 0 688
ENST00000618619 RPL17-023 protein_coding Homo_sapiens 0 688

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